SE2250439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5162
  • Zea mays
  • SE2250439
  • PIF/harbinger
  • To51
  • chr8:157660027-157660440
  • TAA
  • AGGCTAGCTCCAGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     AG         GA     TAAAGGGTTCTGTACTCTAAATATAGAGGATCAAATGGTCCTCTATGCTCTCCAGCAGCGTCCTCTAAACGGTCCTATAAATTTAGAGGACGCTGCTGGATTCTCTATATATAGAGTTTCTCTAAACGGTCCTCTATCTATTTGAATATTTTAAATAACCGGTTTAGCAAAACTAAAATATG
  AGGCT  CTCCAGCAA  GACCC                                                                                                                                                                                      
  |||||  |||||||||  |||||                                                                                                                                                                                      T
  TCCGA  GAGGTCGTT  CAGGA                                                                                                                                                                                      
AA     CA         -G     GATATAGGTAGGAGATATAAGCAGAAAATGTCAGAGGAGATTTTCTAAGATAGGAGATATAGAGGAAAGAGAGGTTGTTGTAGTAGATTTAGTGCAGGAGATATGAGTTTATAGATATAATCTCTGTAAAAAATAAAAATAAAAAACATGTATGCACAAACAGTATGAGAGTTTACATAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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