SE2250444

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5167
  • Zea mays
  • SE2250444
  • PIF/harbinger
  • To56
  • chr9:150824804-150824948
  • TTA
  • GGCTTTGTTTGGATATAGAGGGATTGAAGTGGATTGAGGTGTATTGAAGGGGATTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA     T      --------    -    -       A    AT  A            - GG  TC   GAAAA
    GGCTT GTTTGG        ATAT AGAG GGATTGA GTGG  TG GGTGTATTGAAG G  AT  AAA     
    ||||| ||||||        |||| |||| ||||||| ||||  || |||||||||||| |  ||  |||      
    CCGAA CAAACC        TATA TCTC CCTAACT CACC  GC CCACATAACTTC C  TA  TTT     
ATTC     -      CATTAGAG    A    A       C    AT  A            A AT  TA   GATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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