SE2250445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5168
  • Zea mays
  • SE2250445
  • PIF/harbinger
  • To7
  • chr9:147632992-147633355
  • TGA
  • AGACTAGCCGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG  A   G    --------    ---------     CGCTGCACCGCTCCCTCCCCTTGCATGCGGCGCGTAGGGGGCACCCTATAGCCGCAGCGGTGCCCCCTACAGCGCCCCCTACGTGTCGGTCCCCTTCTCTCTCCCCTCAGATCTAGCGTGTCACTGTTCATCACCCTAAACACTGTGCTGT
  AG CTA CCGC        AGCG         GTGCA                                                                                                                                                       
  || ||| ||||        ||||         |||||                                                                                                                                                       G
  TC GAT GGCG        GGAG         GGGGG                                                                                                                                                       
AG  C   A    TTGGCAAT    ATTTATAAA     ATATAGTGAAAAAGGGGGATAAAAGGGGGGATAAAAAAGTAGAGGGCGTCGCCAAGGGGGATTTATGAGGGGATATGGGGTGATGGTGATATTTTATAGTAAAAGATATAGTTGATAGTTAAAAAATAGATGATTGTTAATGAGCACCTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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