Plant MITE

SE2250448

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5171
Zea mays
SE2250448
PIF/harbinger
To5
chr9:20907065-20907473
TAA
AGGGCCTGTTTGTTTACCCCCCAGATTATATAATCTGTATTA

Secondary structure and sequence

TSD TIR

5'

3'

TA                    -CCA              T    AATAATCCTAAGA      C  A AGTCTAGCTTATTTGCCCAGATTATATAATCTAACCTCTTGAATTATGATAATCCATAAGCAAGTGAGGAGGTGCTTATTTCAGATTATTTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCAC
  AGGGCCTGTTTGTTTACCCC    GATTATATAATCTG ATTA             GGCAAA AA C                                                                                                                                           
  ||||||||||||||||||||    |||||||||||||| ||||             |||||| || |                                                                                                                                            
  TCCCGGACAAACAAATGGGG    CTAATATATTAGAC TAAT             CTAATA TA T                                                                                                                                           
AA                    TTAC              C    ----AAAAACCTC      -  - TAGACCTAATATATTAAACCTAATATATTAGACTCATCAGTACAAACAAATGGGTCTAATAGACCGCACAAAGACAACCCGCTGCCCGAAGAGGCTAGGCTATCCGCGTTTTTGCTAAGCCATCTAATATTACCGTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250448

TAAGGGCCTGTTTGTTTACCCCCCAGATTATATAATCTGTATTAAATAATCCTAAGAGGCAAACAAACAGTCTAGCTTATTTGCCCAGATTATATAATCTAACCTCTTGAATTATGATAATCCATAAGCAAGTGAGGAGGTGCTTATTTCAGATTATTTTTTTCCCACTTCCCCACTACCCTTTCAAGTTTCCTAGAAATTACCCACCATTGCCATTATAATCTACCGAATCGTTTTTGCGCCTATCGGATCGGAGAAGCCCGTCGCCCAACAGAAACACGCCAGATAATCTGGGTAAACAAACATGACTACTCAGATTATATAATCCAAATTATATAATCCAGATTATATAATCCTCCAAAAATAATCCAGATTATATAATCCATTGGGGTAAACAAACAGGCCCTAA

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