Plant MITE

SE2230449

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5172
Zea mays
SE2230449
hAT
Hat30
chr9:1071705-1071895
GAACGACC
CGACCCTTAGTAACC

Secondary structure and sequence

TSD TIR

5'

3'

GAA  AC           AG     CG    GATGGGATCGAGGAACGGGAACGTGGTACGCGGTACGCTACTAAAACTAGGATTTAACACTACTG
   CG  CCTTAGTAACC  GTTCC  GATC                                                                 
   ||  |||||||||||  |||||  ||||                                                                  
   GC  GGAATCATTGG  CCTTG  CCTT                                                                 
CCA  AA           -C     AC    GAATCGGTGCAAGGAGCAAGGCCCTTGCAAGCAAGGCAAGGTCCTTGTACCCTTGTTAGAGCAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230449

GAACGACCCTTAGTAACCAGGTTCCCGGATCGATGGGATCGAGGAACGGGAACGTGGTACGCGGTACGCTACTAAAACTAGGATTTAACACTACTGGAACGAGATTGTTCCCATGTTCCTGGAACGGAACGAACGTTCCCGGAACGAGGAACGTGGCTAAGTTCCCAGTTCCCGGTTACTAAGGAACGACC

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