SE2250450

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5173
  • Zea mays
  • SE2250450
  • PIF/harbinger
  • To32
  • chr9:130511913-130512150
  • TTA
  • AGGGGGTGTTTGGTTGCTTCTGCTAAAGTTTAGCTTGAGTCACATCAAGCGTTTGACTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                 -                    A   A    A  C      -     AAATA  A    G    A   ACCCAACCAACT     A    C   TC   TTTTA
  AGGGGGTGTTTGGTTGC TTCTGCTAAAGTTTAGCTTG GTC CATC AG GTTTGA CTTTT     TG GTAT AAAT TAG            GAACT GATT GTC  GTC     
  ||||||||||||||||| |||||||||||||||||||| ||| |||| || |||||| |||||     || |||| |||| |||            ||||| |||| |||  |||     A
  TCCCCCACAAACCAATG GGGGCGATTTTAAATCGGGT CAG GTAG TT CAAACT GGAGG     GC CATA TTTA ATC            TTTGA TTAA CAG  CAG     
AT                 T                    A   G    C  A      T     -CAAG  C    A    C   --AGCCTAATAT     -    A   -T   CTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End