Plant MITE

SE2250459

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5182
Zea mays
SE2250459
PIF/harbinger
To21
chr9:133219724-133220014
TTA
AGAGCATCTCCAACAATGCCT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 ---    CAAACT       CAAATCGAAA      GCTCTACACAGGAAAAACCACTCCAACAGTGCCTTAATTCAACAATTTTTGTCAAAAAACTATAGGGCACTCTCTCAAGTGCCTCAAATATACTAC
  AGAGCATCTCCAACAAT   GCCT      AATGCCT          TATAGA                                                                                                
  |||||||||||||||||   ||||      |||||||          ||||||                                                                                                 
  TCTCGTAGAGGTTGTTG   TGGA      TTACGGA          TTAAAT                                                                                                
AT                 CAC    -TATTT       -------ATA      TTTTATTCATTTAAAATATCTTAAATCCCGTGGTTTTTTTGTGGGATGAGGTTGTCATTTCGGGGTTTAGATCTAATATCCCGTCGGGTGATGCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250459

TTAGAGCATCTCCAACAATGCCTCAAACTAATGCCTCAAATCGAAATATAGAGCTCTACACAGGAAAAACCACTCCAACAGTGCCTTAATTCAACAATTTTTGTCAAAAAACTATAGGGCACTCTCTCAAGTGCCTCAAATATACTACACCGTAGTGGGCTGCCCTATAATCTAGATTTGGGGCTTTACTGTTGGAGTAGGGTGTTTTTTTGGTGCCCTAAATTCTATAAAATTTACTTATTTTTAAATTATAAGGCATTTTTATAGGTCACGTTGTTGGAGATGCTCTTA

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