SE2250463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5186
  • Zea mays
  • SE2250463
  • PIF/harbinger
  • To46
  • chr9:104093044-104093179
  • TAA
  • AGGGCTAGTTTGGGAGTCCAAATACCGGAGGGGATTGGAGGGGCTAAAATCCCCTTCATATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  -    T                             C    A      AC
  AGGGCTAGTTTGGGAGTC CAAA ACCGGAGGGGATTGGAGGGGCTAAAATCC CTTC TATTCA  
  |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||   
  TCCCGATCAAACCCTCGG GTTT TGGCCTCCCTTAACCTCCCTGATTTTAGG GAGG ATAAGT  
AA                  T    -                             A    A      TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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