Plant MITE

SE2210470

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5193
Zea mays
SE2210470
Tc1/Mariner
St7
chr9:8950538-8950772
TA
TACTACCTCCGTTCACAAATAGATGACACCGTTGACTTTTTTCAAAAACTTTGACCACTCGT

Secondary structure and sequence

TSD TIR

5'

3'

    A          C     G                    -C                   CTTA            ATTCAAAAATGTAAAATTTTAAGTCAAGCACAAACTACCTT
TACT CCTCCGTTCA AAATA ATGACACCGTTGACTTTTTT  AAAAACTTTGACCACTCGT    TTCAAAATATTT                                         
|||| |||||||||| ||||| ||||||||||||||||||||  |||||||||||||||||||    ||||||||||||                                          
ATGA GGAGGCAAGT TTTAT TACTGTGGCAACTGAAAAAA  TTTTTGAAACTGGTGAGCA    AAGTTTTTTTTA                                         
    G          A     A                    TT                   ----            TTACTCAATAGTAAATAAAAAACACTAAACAAAATAGTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210470

TACTACCTCCGTTCACAAATAGATGACACCGTTGACTTTTTTCAAAAACTTTGACCACTCGTCTTATTCAAAATATTTATTCAAAAATGTAAAATTTTAAGTCAAGCACAAACTACCTTAAGTGATAAAACAAATCACAAAAAATAAATGATAACTCATTATTTTTTTTGAAACGAGTGGTCAAAGTTTTTTTAAAAAAGTCAACGGTGTCATATATTTATGAACGGAGGGAGTA

Copy Cancel