Plant MITE

SE2250479

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5202
Zea mays
SE2250479
PIF/harbinger
To39
chr9:147167030-147167225
TTA
AGGCCCTGTTTGGAAACACCCAGTTTTTAAGAAACTGGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT               A  -   A                   --------A   AAAT   GGTGGTTCCAAACATACCAGTTTATGACTAAGTTTATAGAA
  AGGCCCTGTTTGGAA CA CCC GTTTTTAAGAAACTGGTTT         TAG    TGA                                         
  ||||||||||||||| || ||| |||||||||||||||||||         |||    |||                                         A
  TCCGGGACAAACCTT GT GGG CAAAAATTCTTTGGTCAAA         TCG    ATC                                         
AT               C  T   C                   AATATAAAA   ----   CTCTCCGGTCGAAGAGTCAAAAATTCTTTGACTCTTAGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250479

TTAGGCCCTGTTTGGAAACACCCAGTTTTTAAGAAACTGGTTTATAGAAATTGAGGTGGTTCCAAACATACCAGTTTATGACTAAGTTTATAGAAATTAGATTCTCAGTTTCTTAAAAACTGAGAAGCTGGCCTCTCCTAGCTAAAATATAAAAACTGGTTTCTTAAAAACCGGGTTGCTTCCAAACAGGGCCTTA

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