Plant MITE

SE2020002

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5204
Medicago truncatula
SE2020002
Mutator
M2
MtChr5:8782015-8782217
TATAAATAA
AGAGGAGTGTTATTTGAACAACCATTTTGTAGGACAACTTGTGGGACAAC

Secondary structure and sequence

TSD TIR

5'

3'

TATAAATA         T          A         AG        G  G      ------CAAA    AGAAAGAAATGTGAGTCTTGGCACAAAAACCAA
        AGAGGAGTG TATTTGAACA CCATTTTGT  GACAACTT TG GACAAC          ATAT                                 
        ||||||||| |||||||||| |||||||||  |||||||| || ||||||          ||||                                 A
        TCTCTTTAC ATAAACTTGT GGTAAAACA  CTGTTGAA AC CTGTTG          TATG                                 
AATAAATA         T          A         --        A  A      AAAGAGAGAG    AGTGTAGTATAAGAGTAAAAGAGAGAGATAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020002

TATAAATAAGAGGAGTGTTATTTGAACAACCATTTTGTAGGACAACTTGTGGGACAACCAAAATATAGAAAGAAATGTGAGTCTTGGCACAAAAACCAAAGCAATAGAGAGAGAAAATGAGAATATGATGTGAGTATGAGAGAGAAAGTTGTCACAAAAGTTGTCACAAAATGGATGTTCAAATATCATTTCTCTATAAATAA

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