Plant MITE

SE2020004

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5206
Medicago truncatula
SE2020004
Mutator
M4
MtChr3:34286941-34287252
TAATATTTA
AATATTTAGGGTTAATAGGTCTTTACCCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCTGTAAAGTTTTTATTTTGATTCACCCCCTTGTAAAATATTTTTGTTTTGATTTACCCCCCTAATAGGCCAAACAAAAACGAAAATTTCTT

Secondary structure and sequence

TSD TIR

5'

3'

 T      T                        --                 C       -           T                                                   C        C             AA  TC  GAAA
  AATATT AGGGTTAATAGGTCTTTACCCCCT  GTAATATAGGTCATTTC GGTTTTC CCCCTGTAAAG TTTTATTTTGATTCACCCCCTTGTAAAATATTTTTGTTTTGATTTACCCCC TAATAGGC AAACAAAAACGAA  TT  TT    
  |||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||  ||  ||     
  TTATAA TCCCAATTATCCAGAAATGGGGGG  CATTATATCCAGTAAAG CCAAAAG GGGGACATTTT AAAATAAAACTAAGTGGGGGGACATTTTATAAAAACAAAACTAAATGGGGG ATTATCCG TTTGTTTTTGTTT  AA  AA    
AT      -                        GA                 A       T           C                                                   -        A             AA  TA  AAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020004

TAATATTTAGGGTTAATAGGTCTTTACCCCCTGTAATATAGGTCATTTCCGGTTTTCCCCCTGTAAAGTTTTTATTTTGATTCACCCCCTTGTAAAATATTTTTGTTTTGATTTACCCCCCTAATAGGCCAAACAAAAACGAAAATTTCTTGAAAAAAAAAATAAAATTTGTTTTTGTTTAGCCTATTAGGGGGTAAATCAAAACAAAAATATTTTACAGGGGGGTGAATCAAAATAAAACTTTTACAGGGGTGAAAACCAGAAATGACCTATATTACAGGGGGGGTAAAGACCTATTAACCCTAATATTTA

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