Plant MITE

SE2020006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5208
Medicago truncatula
SE2020006
Mutator
M6
MtChr3:38386060-38386250
TTAAAATAT
GGGTCATGTTAACCAGTGTCCCTGGGCACTGGTTAAGGAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAAATAT   TC             T      -   C             --------------C     A   AATTGTTAATAAAAAAAGACACTTTTTA
         GGG  ATGTTAACCAGTG CCCTGG GCA TGGTTAAGGAAGC               AAAAG AGA                            
         |||  ||||||||||||| |||||| ||| |||||||||||||               ||||| |||                             
         CCC  TACAATTGGTCAT GGGGCC CGT ATCAATTCCTTCG               ACGTA ATT                            
TATAAAATT   TT             -      T   A             TTTATATCATTAAAA     -   TTCTACACATTAGTTACGTAATTTTCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020006

TTAAAATATGGGTCATGTTAACCAGTGTCCCTGGGCACTGGTTAAGGAAGCCAAAAGAAGAAATTGTTAATAAAAAAAGACACTTTTTAAGCTTTTAATGCATTGATTACACATCTTTTAATGCAAAAATTACTATATTTGCTTCCTTAACTAATGCTCCGGGGTACTGGTTAACATTTCCCTTAAAATAT

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