Plant MITE

SE2030009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5211
Medicago truncatula
SE2030009
hAT
Hat1
MtChr5:15771251-15771821
CTCCCTCT
TAGGCATGACA

Secondary structure and sequence

TSD TIR

5'

3'

CTCCCTCT        A  AC       -    T     TTACCCGCCCGAACCAAATCCAATTTGACGGGTTTTTCCCGTTTTGACTAGGTTTGGCTATGTGTATGGGTTTTCTCCGATTTCAAAACACGGGTATGGGACGGGTAACGGGTATATAGGTACCCACCCGAACCCATACCCATACCCGTCCCAAATGTAAAAAATTACTTTATGTTGATATGTCATGTTATTTTATTTGATAATTGTCATATTAATGAAAACTACCATTGATATTTGAAGGATCAATT
        TAGGCATG CA  AAAACCC ATAC CGCGG                                                                                                                                                                                                                                                        
        |||||||| ||  ||||||| |||| |||||                                                                                                                                                                                                                                                        A
        ATCCGTAC GT  TACCCCG CCCA CCCCT                                                                                                                                                                                                                                                        
TTTCCCTC        C  --       C    -     GCCCAAAATGGAAGGGGTAGGGGTATTGGCTAAGAGTATATGAATGGACAATGGGATGGGTATGGATTGCCCCTACTCTTTAACTTAGAGTAGGGGCAGGGGCTGCCCAAGCCCATAGGGACGGGGTAGGGGCGTAGCTTATTAAAAAAAATTATTTTTTATCTTCAAAAAAAACGTAGGGGTTCTCGTTGCAACATTATGTAATAGGTGGTTATACAAGTGAAATTGTAAACAATCTGCATTAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030009

CTCCCTCTTAGGCATGACAACAAAACCCATACTCGCGGTTACCCGCCCGAACCAAATCCAATTTGACGGGTTTTTCCCGTTTTGACTAGGTTTGGCTATGTGTATGGGTTTTCTCCGATTTCAAAACACGGGTATGGGACGGGTAACGGGTATATAGGTACCCACCCGAACCCATACCCATACCCGTCCCAAATGTAAAAAATTACTTTATGTTGATATGTCATGTTATTTTATTTGATAATTGTCATATTAATGAAAACTACCATTGATATTTGAAGGATCAATTAAATAATTACGTCTAACAAATGTTAAAGTGAACATATTGGTGGATAATGTATTACAACGTTGCTCTTGGGGATGCAAAAAAAACTTCTATTTTTTATTAAAAAAAATTATTCGATGCGGGGATGGGGCAGGGATACCCGAACCCGTCGGGGACGGGGATGAGATTCAATTTCTCATCCCCGTTAGGTATGGGTAGGGTAACAGGTAAGTATATGAGAATCGGTTATGGGGATGGGGAAGGTAAAACCCGTCCCCACCCCGCCCCATTGCCATGCCTACTCCCTTT

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