SE2050010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5212
  • Medicago truncatula
  • SE2050010
  • PIF/harbinger
  • To1
  • MtChr5:9646457-9646809
  • TTA
  • AGAGCATCCACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT                TG       CACCATTTAAGACCTAGTACCTAATAGGTACTCCCATTGTGGGAGGAAAATTTGGGGATCTTCTAAGACTCAAGGTCTAACTTAAGACTCCATCTTTTAGTGATCTCCCACACACTTTTTTTTATTAAAATAATATGTTAGTGGTGGAAT
   AGAGCATCCACAATGG  AGGTCTT                                                                                                                                                      
   ||||||||||||||||  |||||||                                                                                                                                                       
   TCTCGTAGGTGTTACC  TTTGGGA                                                                                                                                                      
AAT                --       GTTAAACTTCCAGAATTTGCTCAGAGTAGACATGTGTAGTGAAAAAATAATAAAAAATTATTGTTATGAATTATCCATGAGTAAGTGAGGTGATCTCTGGAAGACCGTTTTTCAGATTTATACAGGATGTTGATTGAGAAGGAGCAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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