SE2020012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5214
  • Medicago truncatula
  • SE2020012
  • Mutator
  • M9
  • MtChr5:31889110-31889442
  • AAATAAATA
  • GCTTAATAGCAGTTTTCGCCCCTTAACTTTCACGAAGTTGTGATTTTGGCCCCTTAAGAAAAAAACTACAAAATCACCCCCTAAGTTTTGCAACTGTAGCAGTTTTGGCCCCCCAAGGCCAATTTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATAAATAA          A     C  C          CA                                 -          A    C           AC   A           CCC             ----     AGAAAAAAATAAC           CAC
          GCTTAATAGC GTTTT GC CCTTAACTTT  CGAAGTTGTGATTTTGGCCCCTTAAGAAAAAAA CTACAAAATC CCCC TAAGTTTTGCA  TGT GCAGTTTTGGC   CCAAGGCCAATTT    TTGGT             ATGTGGCACCT   
          |||||||||| ||||| || ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||  ||| |||||||||||   |||||||||||||    |||||             |||||||||||    
          CGAATTATCG CAAAA TG GGGATTGAAA  GTTTCAACGCTAAAATCGGGGGATTCTTTTTTT GATGTTTTGG GGGG ATTCAAAACGT  ACA TGTCAAAACTG   GGTTCTGGTTAAA    AGCCA             TGCACCGTGGG   
ATAAATAAAC          A     T  A          AA                                 T          C    A           AC   C           -TA             ACTG     -----GATGCGAC           ATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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