SE2020014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5216
  • Medicago truncatula
  • SE2020014
  • Mutator
  • M9
  • MtChr3:41133798-41134189
  • ATATTATAG
  • ATATTATAGGCTTAATAGCAGTTTTGGCCTCCTATGTTTTAAGAAGTTGCGATTTTGGCCCCCTAACTAAATAAACTACAAAACCGCCCTCTAAGTATTGACTTTTTTGCAGTTTTGGCCCCCACGGCAAATTTTGACCAAGTCATTGCACACCTGGACGCCACGTGTGTATTTATTT

Secondary structure and sequence

TSD    TIR
5'



3'
   T   A                                                     C                           T                             -  C  C   A                TT  AC  C                        ATTTTTTAAATTT      ATATAT
ATA TAT GGCTTAATAGCAGTTTTGGCCTCCTATGTTTTAAGAAGTTGCGATTTTGGCCC CTAACTAAATAAACTACAAAACCGCCC CTAAGTATTGACTTTTTTGCAGTTTTGGC CC CA GGC AATTTTGACCAAGTCA  GC  AC TGGACGCCACGTGTGTATTTATTT             TTTAAT      
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||||||  ||  || ||||||||||||||||||||||||             ||||||       
TAT ATA CCGAATTATTGTCAAAACCGGGGGATACAAAGTTCTTCAACGCTAAAACCGGG GATTGATTTATTTGATGTTTTGGCGGG GATTCATAACTGAAAAAACGTCAAAACCG GG GT CCG TTAAAACTGGTTCAGT  CG  TG ACCTGCGGTGTACACATAAATAAA             AAATTA      
   T   A                                                     A                           -                             A  A  -   G                TT  AC  C                        -------------      ACTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End