Plant MITE

SE2020015

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5217
Medicago truncatula
SE2020015
Mutator
M7
MtChr5:36970283-36970473
TTTAAATAA
AAGGGTCTTGCTAACAAGTGCCCTAAGAACATTGTTTAAG

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAATA     TCT         G   C  A  AA           GAAC   C  AA  A  CT  GTC        --ATA   CAAACACATA
        AAGGG   TGCTAACAA TGC CT AG  CATTGTTTAAG    CTA AA  AG AA  TT   TTGAAAAT     AGT          
        |||||   ||||||||| ||| || ||  |||||||||||    ||| ||  || ||  ||   ||||||||     |||          T
        TTCCC   ACGATTGTT ACG GA TC  GTAACAAATTC    GAT TT  TC TT  AA   AACTTTTA     TCA          
   ATACA     TTT         G   A  G  CC           -ATA   T  CA  A  AT  ATT        ATACG   ATACTTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020015

TTTAAATAAAGGGTCTTGCTAACAAGTGCCCTAAGAACATTGTTTAAGGAACCTACAAAAAGAAACTTTGTCTTGAAAATATAAGTCAAACACATATAAAATTCATAACTGCATAATTTTCAATTAAATATTACTACTTTTAGATACTTAAACAATGCCCTGAGAGCAGTTGTTAGCATTTCCCTTACATA

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