Plant MITE

SE2020017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5219
Medicago truncatula
SE2020017
Mutator
M12
AC229727:16972-17233
TCTTGTGGA
TCTTGTGGAGGGTGCGGTTATGGTGCATAAGAAAATCCTTATGCACCCTGCATAAATCCAGAAATGGTTTTGGAGT

Secondary structure and sequence

TSD TIR

5'

3'

   TGT     G                   A                         C             - -    A     --  CA        TTCCACAGTAAAATGGTTTTGGCATAATTGGGTTGG
TCT   GGAGG TGCGGTTATGGTGCATAAG AAATCCTTATGCACCCTGCATAAAT CAGAAATGGTTTT G GAGT CAACT  CA  GAAACCAT                                    
|||   ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||| |||||  ||  ||||||||                                     
AGG   TCTCC ACGCCAATACCACGTATTC TTTAGGAATACGTGGGACGTATTTA GTCTTTACCAAAA C CTCA CATGA  TT  TTGGTAAT                                    
   TAT     A                   C                         A             A A    A     AG  --        CTACATGAATTACTAAAGGTCGTGGAACGTATTTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020017

TCTTGTGGAGGGTGCGGTTATGGTGCATAAGAAAATCCTTATGCACCCTGCATAAATCCAGAAATGGTTTTGGAGTACAACTCACAGAAACCATTTCCACAGTAAAATGGTTTTGGCATAATTGGGTTGGGATTTATGCAAGGTGCTGGAAATCATTAAGTACATCTAATGGTTTTGAAGTACAACTCACAAAAACCATTTCTGAATTTATGCAGGGTGCATAAGGATTTCCTTATGCACCATAACCGCAACCTCTTATGGA

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