Plant MITE

SE2030019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5221
Medicago truncatula
SE2030019
hAT
Hat2
MtChr1:6459810-6459970
GCTTTCGA
TCGACTATGAAGCACGG

Secondary structure and sequence

TSD TIR

5'

3'

GCTT    ----             ------T  - T -  TGGATTAGGCGTGTCCCAGTGTCGGTGTCGACACAACACCTATGATTA
    TCGA    CTATGAAGCACGG       CA C C CT                                                
    ||||    |||||||||||||       || | | ||                                                 
    AGCT    GATACTTCGTGCC       GT A C GT                                                
        TTCG             TGTATCT  G - T  GGCCTGTGGCTGTGCCTACTATTAAACTCTGTTACTATATTAAATCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030019

GCTTTCGACTATGAAGCACGGTCACTCCTTGGATTAGGCGTGTCCCAGTGTCGGTGTCGACACAACACCTATGATTACACTAAATTATATCATTGTCTCAAATTATCATCCGTGTCGGTGTCCGGTGTCAGTGTCTATGTCCGTGCTTCATAGGCTTTCGA

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