Plant MITE

SE2020020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5222
Medicago truncatula
SE2020020
Mutator
M9
MtChr8:29630601-29630935
AAAATATTA
AATATTAGGCTTAATAGTAGTTCTCGCCCCCTAACTTTCACGAAGTTGTGATTTTGACCCCTTAAGAAAAAAATTACAAAACCGTCCCCTAAGTTTTGCAACTGTAGCAGTTTTGGCCCCCAAGATCAATTTTTGGT

Secondary structure and sequence

TSD TIR

5'

3'

AA      -A  C            CTC   C         CAC               AC                  C    C G                AC   A             C    A       ----     AAAAAATAAATAAATAACAC         CAC
  AATATT  GG TTAATAGTAGTT   GCC CCTAACTTT   GAAGTTGTGATTTTG  CCCTTAAGAAAAAAATTA AAAA C TCCCCTAAGTTTTGCA  TGT GCAGTTTTGGCCC CAAG TCAATTT    TTGGT                    GTGACATCT   
  ||||||  || ||||||||||||   ||| |||||||||   |||||||||||||||  |||||||||||||||||| |||| | ||||||||||||||||  ||| ||||||||||||| |||| |||||||    |||||                    |||||||||    
  TTATAA  CC AATTATTGTTAA   CGG GGATTGAAA   TTTCAACGCTAAAAC  GGGGATTCTTTTTTTGAT TTTT G GGGGGATTCAAAACGT  ACA TGTCAAAACTGGG GTTC AGTTAAA    AGCCA                    CACTGTGGG   
        AA  A            AAT   A         AGA               CA                  A    A A                AA   C             A    C       ACTG     ----------GATGCAACTA         ATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020020

AAAATATTAGGCTTAATAGTAGTTCTCGCCCCCTAACTTTCACGAAGTTGTGATTTTGACCCCTTAAGAAAAAAATTACAAAACCGTCCCCTAAGTTTTGCAACTGTAGCAGTTTTGGCCCCCAAGATCAATTTTTGGTAAAAAATAAATAAATAACACGTGACATCTCACTTAGGGTGTCACATCAACGTAGACCGAGTCAAAATTGACCTTGAGGGTCAAAACTGTCACAAATGCAAAACTTAGGGGGAGATTTTATAGTTTTTTTCTTAGGGGACCAAAATCGCAACTTTAGAAAAGTTAGGAGGCTAAAATTGTTATTAAACCAAAATATT

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