SE2020021

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5223
  • Medicago truncatula
  • SE2020021
  • Mutator
  • M13
  • MtChr8:1837605-1837996
  • TTTGTTTAT
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
     TGTTTATAGACTTAATTGTAGTTTTGGTCCTCATATTTTCATCATTTTACAAAATTGGTCTCTCTATTTTAAAATTCGACAATTTTAGTCCCTCTATCAAATATTTTGTCTAAAATATTGTGATATGATATGTTTTAAATGAAGTTTTCAATGAAATTTTGTTACAATTTCATCGATGTTGATATTTTTTCA
   TT                                                                                                                                                                                                
   ||                                                                                                                                                                                                T
   CG                                                                                                                                                                                                
TTA  TGAAATCGGAAAATATTAGTTTATGGGGTAGGTTAATGTAAATATTGTTGCGAATTAACGTGAAAAACAGGGGGATAAAAGTGATAAAACGTCTTAACCAGGGGGATAAAATTTTAAGCTATCAAAACCAGTGAGGTAGTATAAGAATTTGATATTTTTACACTACACTATTTAAAATTTACAACACCTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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