Plant MITE

SE2050023

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5225
Medicago truncatula
SE2050023
PIF/harbinger
To2
MtChr1:30588036-30588407
TTA
AGGCTATGTTTGCGAGTTTGGAGGGGAAGGGAGGGGAGGGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

TT     A      C              A               -  AAAAAAA          -  T       ATA     CATTGG       GGCTTTGGAGGGTTTATTTTTCTTCAAAACATAAAACCCTCCTCATTTGGGGGAACTAAAAAATTGTATTGGAGGAGGGTTTATATGAATTCTTC
  AGGCT TGTTTG GAGTTTGGAGGGGA GGGAGGGGAGGGTTT GG       GGGAGGAGTA AG GGAAGAA   GAGGA      GAGGAGG                                                                                               
  ||||| |||||| |||||||||||||| ||||||||||||||| ||       |||||||||| || |||||||   |||||      |||||||                                                                                               A
  TCCGA ACAAAC CTCAAACCTCCCCT CCCTTCCTTCCCGAA CC       CTCTCTTTAT TC CCTTTTT   CTCTT      AGAAAGT                                                                                               
AT     A      C              C               A  ----CCC          A  -       -AA     -----T       GTAAAAAACTTTCTCATAAAAAAATCTCACTATTTAATTAAAATACTACTTATATAAAAATTAAAATTCTTATAATATCGTTGTATATAATTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050023

TTAGGCTATGTTTGCGAGTTTGGAGGGGAAGGGAGGGGAGGGTTTGGAAAAAAAGGGAGGAGTAAGTGGAAGAAATAGAGGACATTGGGAGGAGGGGCTTTGGAGGGTTTATTTTTCTTCAAAACATAAAACCCTCCTCATTTGGGGGAACTAAAAAATTGTATTGGAGGAGGGTTTATATGAATTCTTCAAATTTAATATATGTTGCTATAATATTCTTAAAATTAAAAATATATTCATCATAAAATTAATTTATCACTCTAAAAAAATACTCTTTCAAAAAATGTGAAAGATTTCTCAATTTTTCCCTATATTTCTCTCCCCCCAAAGCCCTTCCTTCCCCTCCCCTCCAAACTCCCAAACAAAGCCTTA

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