Plant MITE

SE2030024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5226
Medicago truncatula
SE2030024
hAT
Hat2
MtChr8:33657979-33658164
GTGATATC
ATATCCTATGAAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

GTG  AT  T         TGACAC  ACACCGGACACGATTTGGACACAACCACGCCAACCCCGAAAAATAATTTGAGAAAATGATATAATTTAGT
   AT  CC ATGAAGCAC      GG                                                                      
   ||  || |||||||||      ||                                                                       
   TA  GG TACTTCGTG      CT                                                                      
  A  GT  T         ------  TGTGAGGAACCTAATCCACGCGATTCAACAGCCCGTGCACAGCCACAGGCTGTGGTTTTGGATACTAATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030024

GTGATATCCTATGAAGCACTGACACGGACACCGGACACGATTTGGACACAACCACGCCAACCCCGAAAAATAATTTGAGAAAATGATATAATTTAGTGTAATCATAGGTTTTGGTGTCGGACACCGACACGTGCCCGACAACTTAGCGCACCTAATCCAAGGAGTGTTCGTGCTTCATTGGTGATA

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