Plant MITE

SE2010025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5227
Medicago truncatula
SE2010025
Tc1/Mariner
St1
MtChr2:27021821-27021978
TA
TACTCCCTCCGGTCCTATTTATA

Secondary structure and sequence

TSD TIR

5'

3'

                       ACTTATA     CAT          T         CA   A             C   A
TACTCCCTCCGGTCCTATTTATA       AGAAA   TTGACTTTTT GATTCATTG  TAA TGATGTATTTGGT TAT 
|||||||||||||||||||||||       |||||   |||||||||| |||||||||  ||| ||||||||||||| ||| T
ATGAGGGAGGCTAGGATAAATAT       TCTTT   AACTGAAAAA CTAAGTAAC  ATT ACTACATAAACCA ATA 
                       -------     TTC          T         TC   A             A   T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010025

TACTCCCTCCGGTCCTATTTATAACTTATAAGAAACATTTGACTTTTTTGATTCATTGCATAAATGATGTATTTGGTCTATATTATAAACCAAATACATCAATTACTCAATGAATCTAAAAAGTCAACTTTTTCTTATAAATAGGATCGGAGGGAGTA

Copy Cancel