SE2010026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5228
  • Medicago truncatula
  • SE2010026
  • Tc1/Mariner
  • St2
  • AC235665:214875-215608
  • TA
  • TACTCTCTCCGTTTCAAAATACATGTCCATTTTAGAGAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                           C     A        TTTT  -T    AAT   T  CCATTTCA      AAG      -TTTTG      T           -A    TTAATTGGATTCTAGATTTTCTCCACAATAATTATTTTCCACTAATAAATGTTGACCCAATTTTAAGTAGATTTACTCATGCACTCTCCCAAGAAATTATTTTCCCATGACTACTGCACTCTAATCCATCGTAACTAACTACTCCTAATTAATTGGACTCTCTAATTTGTTTATAAAAATTGAGTTTTTATAATTAAAACTACCGAAAAAAAATGGAAAACAAAGGAAAGTCTGTGAAAGTTGAATCTTGCACAATGAA
TACTCTCTCCGTTTCAAAATACATGTC ATTTT GAGAAATT    GT  TCAA   ACA GT        TAGTTT   GATACA      TCTATT TACCCTTGTCT  CCAA                                                                                                                                                                                                                                                                   
||||||||||||||||||||||||||| ||||| ||||||||    ||  ||||   ||| ||        ||||||   ||||||      |||||| |||||||||||  ||||                                                                                                                                                                                                                                                                    
ATGAGGGAGGCAAAGTTTTATGTACAG TAAAA CTCTTTAA    CA  GGTT   TGT CG        ATCAAA   CTGTGT      GGATAA ATGGGAACAGA  CTAA                                                                                                                                                                                                                                                                   
                           A     C        -CGT  TT    -CC   T  --------      ---      TTTCAA      T           AA    AAGAGGTAAAATGTAAATAAATGGGGTAGAGTATTAATGAGGGTTATGGTTATGGTTTTAATTAATTTAAGTTAGTAGGAAGTTATGGTTATGTATGACCGTTATGGTTATGTATACCAAGTAGATCATTTAGTGTACCAAAAACGACGCCAATACATAACTTTTATCGTACGGTTATATTAAAAAAAAGTTGAAGAGAATAGTACGAAGCCAATAGTTAAAAAAAAATTTGAGTTAACTTTTTTCTCAGAAGTTGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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