Plant MITE

SE2010027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5229
Medicago truncatula
SE2010027
Tc1/Mariner
St3
MtChr4:25325926-25326214
TA
TACTCCCTCCGTCCCTATAT

Secondary structure and sequence

TSD TIR

5'

3'

           T             -   TTTTTGCTTTTTTTCACATTTCTTAAGAAAAGTTGTTAGTGCAATTAATGTGTCTATTTTGTGTGTTAATATTACTAAATTATCCTTTGTTTATATGCGTATTAAATTTGATTTTT
TACTCCCTCCG CCCTATATGTAAG CCC                                                                                                                    
||||||||||| ||||||||||||| |||                                                                                                                     
ATGAGGGAGGC GGGATATAGATTT TGT                                                                                                                    
           C             G   ATAAACTGAAATAAAAACAGAAATTTACATTTGGGGAAAAGTTTAATGATTTAAGTAAATAATAATAAAAGGATTTGTATAGAAATTAATTATAATGGTTGAACGGAACTTTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010027

TACTCCCTCCGTCCCTATATGTAAGCCCTTTTTGCTTTTTTTCACATTTCTTAAGAAAAGTTGTTAGTGCAATTAATGTGTCTATTTTGTGTGTTAATATTACTAAATTATCCTTTGTTTATATGCGTATTAAATTTGATTTTTTATATTTCAAGGCAAGTTGGTAATATTAATTAAAGATATGTTTAGGAAAATAATAATAAATGAATTTAGTAATTTGAAAAGGGGTTTACATTTAAAGACAAAAATAAAGTCAAATATGTGTTTAGATATAGGGCCGGAGGGAGTA

Copy Cancel