SE2020028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5230
  • Medicago truncatula
  • SE2020028
  • Mutator
  • M14
  • MtChr8:1318870-1319206
  • TTGTTCTTA
  • AGGCAAAATTTCACTTTTAGTCCCTTAACTTAATTTCAGGTAATAGTTTGGTCCTTTATCTTTTCTTCATTTCAGTTTTGTCCTTTTGGTCCATTTGCGTATGGATTTTCAAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTCTT          T                     A     G                         C                                               G  TCAAATTCAT    T  TTTTCTTATGGCCTCCCAATCTTCAAATCTATG
        AGGCAAAATT CACTTTTAGTCCCTTAACTTA TTTCA GTAATAGTTTGGTCCTTTATCTTTT TTCATTTCAGTTTTGTCCTTTTGGTCCATTTGCGTATGGATTTTCAA CT          GGTT TA                                 
        |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||          |||| ||                                 A
        TCCGTTTTAA GTGAAAATCAGGGAATTGAAT AAGGT CATTGTCAAACCAGGAAATAGAAAA AAGTAAAGTTAAAACAGGAAAACCAGGTAAACGTATACTTAAAAGTT GA          GTTT AG                                 
ATTCTTAT          T                     C     A                         A                                               G  ---------T    -  ATGATTATAAAGATACGTTTGTATCTACTTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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