Plant MITE

SE2020029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5231
Medicago truncatula
SE2020029
Mutator
M2
MtChr3:42044556-42044742
ATCAAATAG
GAGAAATGATATTTGAACATCCATTTAGTGACAACTT

Secondary structure and sequence

TSD TIR

5'

3'

ATCAAATA   AAA  A          T   -   A          TCTCTTTTATACTCACATTATTTTTTTACTTTATCTCT    TACTATAGTTTTCGTGTCAATATCA
        GAG   TG TATTTGAACA CCA TTT GTGACAACTT                                      CTAT                         
        |||   || |||||||||| ||| ||| ||||||||||                                      ||||                         C
        CTC   AC ATAAACTTGT GGT AAA CACTGTTGAA                                      AAAC                         
  AACTAA   CTC  A          T   T   C          -------------------------------------T    TGTTGGTATTAAATGTTTCTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020029

ATCAAATAGAGAAATGATATTTGAACATCCATTTAGTGACAACTTTCTCTTTTATACTCACATTATTTTTTTACTTTATCTCTCTATTACTATAGTTTTCGTGTCAATATCACTTTTTTCTTTGTAAATTATGGTTGTCAAATAAGTTGTCACCAAATTGGTTGTTCAAATAACACTCCTCAATCAA

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