SE2020030

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5232
  • Medicago truncatula
  • SE2020030
  • Mutator
  • M9
  • MtChr3:1847085-1847421
  • TTAGATATT
  • AGATATTTGGCTTCATAGTAGTTTTCGCCCCCTAACTTTTACGAAGTTGCAATTTTAGTCCCCTAGAAAAAAACTACAAAACCACCCCTTAAGTTTTGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TT         -    C           C   C         TA       G A     A T      -                  AC               ACTATA        T      -    C      ----     AAAAAAAAAATAAAAAAATAAC           CAC
  AGATATTTG GCTT ATAGTAGTTTT GCC CCTAACTTT  CGAAGTT C ATTTT G CCCCTA GAAAAAAACTACAAAACC  CCCTTAAGTTTTGCA      GCAGTTTT GCCCCC AAGG CAATTT    TTGGT                      ACGTGGCACCT   
  ||||||||| |||| ||||||||||| ||| |||||||||  ||||||| | ||||| | |||||| ||||||||||||||||||  |||||||||||||||      |||||||| |||||| |||| ||||||    |||||                      |||||||||||    
  TTTATAGAT CGAA TATCGTCAAAA CGG GGATTGAAA  GTTTCAA G TAAAA C GGGGAT CTTTTTTTGATGTTTTGG  GGGGATTCAAAACGT      CGTCAAAA CGGGGG TTCT GTTAAA    AGCCA                      TGCACCGTGGG   
           T    T           T   A         AG       A C     C T      T                  CA               ----AC        C      A    A      ACTG     --------------GATGCGAC           ATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End