SE2030033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5235
  • Medicago truncatula
  • SE2030033
  • hAT
  • Hat4
  • MtChr1:16463141-16463643
  • TAGGGTTG
  • TAGGGTTGGGAATAGGCCAGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
                           TTTGATAGGCCTGAGCCTGGCCTACGAAAAAATTTACAAGCTTGAGCCTGGCCTATGACATTTCATAGGCCTATTTTTTTGGCCTAGCCTGACCTATTTAAAAGTCTGGTCTGGCCCGAAAGCTTATTTACAGGCCTATTTACTATTAAAGTCACTAAACATTCCATTTTATCTACTTTTAAATAGGCTTAATAGGCCTCAAAGTCTATTTTAGTGTAAGACTT
TAGGGTTGGGAATAGGCCAGGCCAGGC                                                                                                                                                                                                                                
|||||||||||||||||||||||||||                                                                                                                                                                                                                                G
ATCCCAACCCTTATCCGGTCCGGCCGG                                                                                                                                                                                                                                
                           ATGTCCCCGGATACCGGACCGGACTGGACAAATAATTTTTCCAATCCGAATCTGTAAAATTTTTCGGATAAATTCATTTATCCGGTCCGAATCCGATAGTTTTTTCGGATACTTCGGATTATCCGACTGGACAAATACGTACAATCCGAAGTATCACCTGAAAAATTTATCCGAAATTTCGAAATATCACTTTATCTGAAAATTCCGGAATATCATCACTATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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