Plant MITE

SE2030035

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5237
Medicago truncatula
SE2030035
hAT
Hat5
MtChr3:31700183-31700524
ATTCGGGT
ATTCGGGTCAGGGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

           G       C  CCCCCC    ----   --   A -- ACTAGCCCAGGCTCAGCTCCGACTTTCCTTGTAGCAAGCCCAGCCATTACTAGAACTTTTAGCTTTTCCTGCGGATTTACTTGCGCATTTTTGTCTAAATTCCGCAGGAAACACATTTCCTGCCGATTT
ATTCGGGTCAG GGCGGAG CA      AGCT    AGC  CTG G  C                                                                                                                                 
||||||||||| ||||||| ||      ||||    |||  ||| |  |                                                                                                                                 T
TGGGCTTAGTC CCGCCTC GT      CCTT    TAT  CAG A  C                                                                                                                                 
           A       A  ------    AAAA   CT   - TC GTTTTTTAAATAGCGTTTTGCAATGAAGGAAGGACGCTTATTAAAGTGTAAAGGACGTCTATTAAAATGTAAAGGACGCCTAGGATTTTAGGATTCCATAATGGAGTGTACTCTTGGATTTAAGAACCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030035

ATTCGGGTCAGGGGCGGAGCCACCCCCCAGCTAGCCTGAGCACTAGCCCAGGCTCAGCTCCGACTTTCCTTGTAGCAAGCCCAGCCATTACTAGAACTTTTAGCTTTTCCTGCGGATTTACTTGCGCATTTTTGTCTAAATTCCGCAGGAAACACATTTCCTGCCGATTTTGCCAAGAATTTAGGTTCTCATGTGAGGTAATACCTTAGGATTTTAGGATCCGCAGGAAATGTAAAATTATCTGCAGGAAATGTGAAATTATTCGCAGGAAGGAAGTAACGTTTTGCGATAAATTTTTTGCCTAGACTCTATAAAATTCCTGACTCCGCCACTGATTCGGGT

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