Plant MITE

SE2020036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5238
Medicago truncatula
SE2020036
Mutator
M17
MtChr4:21922238-21922438
TATACATAA
GGAAAATGTTACATAGACACCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TATACATAA   -AA   T          C    -TATA G       -C    T   A        CTAGGAAGAGAGAAGAGGAGAT    GAGAAA     T        G
         GGA   ATG TACATAGACA CCTT     A AATACAT  CTTG ACA CTCATGCA                      GAAG      GTGTG TTGTGTGG 
         |||   ||| |||||||||| ||||     | |||||||  |||| ||| ||||||||                      ||||      ||||| |||||||| G
         TCT   TAT ATGTATCTGT GGAA     T TTATGTG  GAAT TGT GAGTGTGT                      TTTT      TACAT AGTACACC 
 AATACATA   CAA   T          T    TCCAC G       AA    -   -        ----------------------    AGACTG     C        T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020036

TATACATAAGGAAAATGTTACATAGACACCCTTTATAAGAATACATCCTTGTACAACTCATGCACTAGGAAGAGAGAAGAGGAGATGAAGGAGAAAGTGTGTTTGTGTGGGGTCCACATGACTACATGTCAGATTTTTGTGTGAGTGTTAAGAAGTGTATTGTCACCTAAGGTTGTCTATGTATTATAACTCTATACATAA

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