SE2050037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5239
  • Medicago truncatula
  • SE2050037
  • PIF/harbinger
  • To3
  • MtChr5:20694352-20694545
  • TAA
  • AGTGTGTTTGGATGAATGAATGTTTTGAAGGAATGTAATATTTTAAGGGAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAC               ------A    T           ATG   T      A  G    CAAA      --    --        A  GT   G  GGGGG
    AGTGTGTTTGGATGA       TGAA GTTTTGAAGGA   TAA ATTTTA GG AATT    TACTTT  GGTG  TGAATTCC TT  TTG AT     
    |||||||||||||||       |||| |||||||||||   ||| |||||| || ||||    ||||||  ||||  |||||||| ||  ||| ||     A
    TCACACAAACCTACT       ACTT TAAAATTTCTT   ATT TAAGAT CC TTAA    ATGGAG  TCAT  ACTTAAGG AA  AAT TA     
ATTC               CCATTAA    T           -AA   T      -  G    ----      TT    AA        -  GT   G  ATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End