Plant MITE

SE2020039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5241
Medicago truncatula
SE2020039
Mutator
M18
MtChr1:25172024-25172219
TAAAAAGAA
AGAAGAATGCTAGCAACACTCTCTTTTGAGCAC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAAAGA   A                             CCTCTCTAGCAC                             T T  CAC      --AT    A
        AGA GAATGCTAGCAACACTCTCTTTTGAGCAC            TCACTCTTTTATTGGGTGAAATCAATGTA G CC   CACTTT    GTGG 
        ||| |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||| | ||   ||||||    |||| T
        TCT TTTACGGTCGTTGTGAGAGAAAACTCGTG            AGTGAGAAAATAACCCATTTTAGTTACAT C GG   GTGAAA    TACC 
AAGAAAAA   C                             ------------                             C T  -AT      CTTT    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020039

TAAAAAGAAGAAGAATGCTAGCAACACTCTCTTTTGAGCACCCTCTCTAGCACTCACTCTTTTATTGGGTGAAATCAATGTATGTCCCACCACTTTATGTGGATTCCATTTTCAAAGTGTAGGTCCTACATTGATTTTACCCAATAAAAGAGTGAGTGCTCAAAAGAGAGTGTTGCTGGCATTTCTCTAAAAAGAA

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