SE2020040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5242
  • Medicago truncatula
  • SE2020040
  • Mutator
  • M18
  • MtChr2:29183481-29183688
  • TTAAATTTT
  • AAATTTTGAGTAATGCTATGGATACTCTCTTTTCAACACTCTCTCTAACACTCACTTTCTTATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      -T           TG                        CT        C   C       ATGAAACTAGT   T  C    CACTTTAAGTGGAACCT
  AAATTT  GAGTAATGCTA  GATACTCTCTTTTCAACACTCTCT  AACACTCA TTT TTATTGG           GTA GT CCAC                 
  ||||||  |||||||||||  ||||||||||||||||||||||||  |||||||| ||| |||||||           ||| || ||||                 A
  TTTAAA  CTCATTACGAT  TTGTGAGAGAAAAGTTGTGAGAGG  TTGTGAGT AAA AATAACC           TAG TT CACC                 
 T      TT           CG                        AT        A   T       ------AAATT   -  C    CAAAGTGTGTAACTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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