SE2050044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5246
  • Medicago truncatula
  • SE2050044
  • PIF/harbinger
  • To5
  • MtChr4:20257280-20257657
  • AAG
  • AGGGGGTGTTTGTTTCAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
A               CAA  --TTAA    GA              -    A  A        TT   -     ---- TTTGTTATGAGGTTGAGAAAAAAAATATTTCTGGGTATAAAGGTTCATGGAAATAGAGTAACTTCCCATAACTTCCATTATTCCCATAAACTTATTCCCATGTAAAGAGATGGG
 AGGGGGTGTTTGTTT   GG      GAAT  TATTCCCGGGAATA CATG CT GGGAATGA  ATA CCCAT    G                                                                                                                  
 |||||||||||||||   ||      ||||  |||||||||||||| |||| || ||||||||  ||| |||||    |                                                                                                                  A
 TCCCCTGCAAACAAA   CC      TTTA  ATAAGGGTCCTTAT GTAT GG CCCTTACT  TAT CTTTT    T                                                                                                                  
A               AAC  TTTGTG    --              T    -  G        TT   A     AAAC AAGAACCCATAAACAATTTTTTTCACAAACCGTTTATTGAACTGTAAGGATCTTTTTAACCTTCAATGTTAAAAAAATTTTTTTTAGATACGTATTATAGTACCCTTACATGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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