Plant MITE

SE2010048

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5250
Medicago truncatula
SE2010048
Tc1/Mariner
St6
MtChr2:19802904-19803195
TA
TACTCCCTCCGTCCCGAATTAGCTGAGCCATTT

Secondary structure and sequence

TSD TIR

5'

3'

                AAT        C     TTTCA   --    CATA    GACA -----      AAATAAA GAGAGAGAAAATGATTTTAAGTGCTCTTGTTAAGTATTGGTGCATTCTCCACTATCATAAATGCAAAATGAAATATATTG
TACTCCCTCCGTCCCG   TAGCTGAG CATTT     TTT  CACA    TTAA    A     ATGTAT       G                                                                                
||||||||||||||||   |||||||| |||||     |||  ||||    ||||    |     ||||||       |                                                                                A
ATGAGGGAGGCAGGGT   ATTGACTC GTAAA     CGT  ATTT    TTCA    C     TTTATT       G                                                                                
                GTT        T     -----   TT    ----    ---- AGGGT      ------- ACTCAGTAAAGTGAAAAGTTATGTTATAATTAATGAAAGAGAAATATTGACATTAATTATGATGAAAGTGTTGAAGGTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010048

TACTCCCTCCGTCCCGAATTAGCTGAGCCATTTTTTCATTTCACACATATTAAGACAAATGTATAAATAAAGGAGAGAGAAAATGATTTTAAGTGCTCTTGTTAAGTATTGGTGCATTCTCCACTATCATAAATGCAAAATGAAATATATTGAATTGGAAGTTGTGAAAGTAGTATTAATTACAGTTATAAAGAGAAAGTAATTAATATTGTATTGAAAAGTGAAATGACTCAGTTATTTTGGGACACTTTTTATTTGCAAATGTCTCAGTTATTGTGGGACGGAGGGAGTA

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