SE2020055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5257
  • Medicago truncatula
  • SE2020055
  • Mutator
  • M24
  • MtChr6:1421921-1422224
  • TTGAATAAA
  • AAGGGTTAATAGTGTTTTTCACCCTTGTAATATATGTCATTTCCGGTTTTCGCCCCTATAAAATTTTCAGTTTGATTTGCACCCTCGTAAAAATTTTATTTTCCAGAAAACACCCTTAATAGGCCATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGAATA                    A                                               A                       A           A                       CAAAAACCAAAAT   TT   AAA
       AAGGGTTAATAGTGTTTTTC CCCTTGTAATATATGTCATTTCCGGTTTTCGCCCCTATAAAATTTTC GTTTGATTTGCACCCTCGTAAAA TTTTATTTTCC GAAAACACCCTTAATAGGCCATT             TTC  GAA   
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||             |||  |||    
       TTCCCAATTATCACAAAAAG GGGGACATTATATACAGTAAAGGCCAAAAGCGGGGATATTTTAAAAG CAAACTAAACGTGGGAGCATTTT AAAATAAAAGG CTTTTGTGGGGATTATCCGGTAA             AAG  CTT   
AAATAAG                    C                                               C                       A           C                       -------------   -T   AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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