Plant MITE

SE2020056

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5258
Medicago truncatula
SE2020056
Mutator
M25
MtChr1:6941634-6941841
TGAAAACCA
AGAGAAATGCTAGCAACACACATTTTAACACACATTTTTCAACACATTTTCTTTAATCGGTTAAAATTCA

Secondary structure and sequence

TSD TIR

5'

3'

TGAAAACC         C                    C                       A  C            AAGAGTT  C       -C      G
        AGAGAAATG TAGCAACACACATTTTAACA ACATTTTTCAACACATTTTCTTT AT GGTTAAAATTCA       CC ACCAAAT  ATGTGG 
        ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||       || |||||||  |||||| T
        TCTCTTTAC ATCGTTGTGTGTAAGATTGT TGTGAAAAGTTGTGTAAGAGAAA TA TCAATTTTAAGT       GG TGGTTTA  TATACC 
ATCAAAAA         A                    T                       C  C            GTACCCT  A       AA      C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020056

TGAAAACCAGAGAAATGCTAGCAACACACATTTTAACACACATTTTTCAACACATTTTCTTTAATCGGTTAAAATTCAAAGAGTTCCCACCAAATCATGTGGGTCCCATATAAATTTGGTAGGTCCCATGTGAATTTTAACTCATCAAAGAGAATGTGTTGAAAAGTGTTTGTTAGAATGTGTGTTGCTAACATTTCTCTAAAAACTA

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