Plant MITE

SE2020058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5260
Medicago truncatula
SE2020058
Mutator
M2
MtChr3:43124889-43125076
TATATAAGA
TATATAAGAG

Secondary structure and sequence

TSD TIR

5'

3'

        A   AAATGA      T     C    -CT   C     TCTCTCTTATACTCACATTATTTTTTTACTTTCTCTCT   TTGCTTTGGTTTTTGTGTCAATACTT
  TATATA GAG      TATTTG ACAAC ATTT   TGA AACTT                                      CTA                          
  |||||| |||      |||||| ||||| ||||   ||| |||||                                      |||                          C
  ATATAT CTC      ATAAAC TGTTG TAAA   ACT TTGAA                                      ACA                          
AA      -   AACAAA      T     A    CTT   T     -------------------------------------T   CTGTTGGTAACTAAATGTTTCTTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020058

TATATAAGAGAAATGATATTTGTACAACCATTTCTTGACAACTTTCTCTCTTATACTCACATTATTTTTTTACTTTCTCTCTCTATTGCTTTGGTTTTTGTGTCAATACTTCATTTTCTTTGTAAATCAATGGTTGTCACATAAGTTTTCATTCAAATAGTTGTTCAAATAAAACAACTCTATATAAA

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