SE2020059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5261
  • Medicago truncatula
  • SE2020059
  • Mutator
  • M1
  • MtChr2:950473-950876
  • TATATTATT
  • ATATTATTGGTCAAATGCATCTAAAGGTCCTTTAAGTTTTTCATTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCCTTTTAGTTTTTGAATCTTTCAAACAAGTCCT

Secondary structure and sequence

TSD    TIR
5'



3'
T   T   T                 G   C            A                                   C                           -               ---------ATTGTA   AGCATAGTTGGTAATTGCTTCCTTGAACTCATCTTTGGTACCAAATCTGGCTCCTAACACCCACTT
 ATA TAT GGTCAAATGCATCTAAA GTC TTTAAGTTTTTC TTTTTCCCAAAGTGGTCCTTTAAGTTTCAAAAGTC CAAACAAGTCCTTTTAGTTTTTGAATC TTTCAAACAAGTCCT               GAT                                                                  
 ||| ||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||               |||                                                                  A
 TAT ATA CCAGTTTACGTAGATTT CAG AAATTCAAAAAG AAAAAGGGTTTCACCAGGAAATTCAAAGTTTTCAG GTTTGTTCAGGAAAATCAAAAACTTAG AAAGTTTGTTCAGGA               ACT                                                                  
T   T   T                 A   -            C                                   A                           C               AAATTTCCTACTACC   ACTAAGTCTACTATCGTTGTTTCTCGTAATAGGTGGTAAACGGTACGGATTTTTCTACTGATTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End