SE2020065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5267
  • Medicago truncatula
  • SE2020065
  • Mutator
  • M29
  • MtChr2:1217681-1218086
  • TAAAAAAAA
  • AGGTCGAATACCTCTTCAGGTTCTTTAAGTTTCACGTTTATTTCAGATAGATCCTTTAAGTTTTTAAAGTTTCAGATAGATCCTTTAAGTTTGGAGTTTGTTTCGGATAGGTCATTTAAGTTTATAAGGTTTCAGATAGGTCCTTTAAGTTTCCAGTTTGTTTCGGATAGGTCATTTCTATCAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAAAA                CA                     A            CC    A        A    C      A            G                G   A         A       T      G        A     C               G              CCTCTGTTAA    AA
        AGGTCGAATACCTCTT  GGTTCTTTAAGTTTCACGTTT TTTCAGATAGAT  TTTA GTTTTTAA GTTT AGATAG TCCTTTAAGTTT GAGTTTGTTTCGGATA GTC TTTAAGTTT TAAGGTT CAGATA GTCCTTTA GTTTC AGTTTGTTTCGGATA GTCATTTCTATCAA          GTCA  
        ||||||||||||||||  ||||||||||||||||||||| ||||||||||||  |||| |||||||| |||| |||||| |||||||||||| |||||||||||||||| ||| ||||||||| ||||||| |||||| |||||||| ||||| ||||||||||||||| ||||||||||||||          ||||   
        TCCGGTTTATGGAGGG  CCAGGAAATTCAAAGTGCAAA AAAGTCTATTTA  AAAT CAAAGATT CAAA TCTATC AGGAAATTCAAA CTCAAACAAAGCCTAT CAG AAATTCAAA ATTCCAA GTCTAT CAGGAAAT CAAAG TCAAACAAAGTCTAT CAGTAAAGATAGTT          TAGT  
AAAAAAAA                AC                     C            AA    C        C    A      C            G                A   G         G       T      A        A     T               A              ----------    TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End