Plant MITE

SE2050067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5269
Medicago truncatula
SE2050067
PIF/harbinger
To4
MtChr1:18694965-18695177
TTA
GGCCCGTTTGGATGGAGCTTATTTTG

Secondary structure and sequence

TSD TIR

5'

3'

TTAG             G            AACTTTGCAAAAC                  A  G     TTATT        ----A   --        ----AG       AAAA
    GGCCCGTTTGGAT GAGCTTATTTTG             AGCTTATGCAAATAAATA GC TTTAT     ATTTATAA     CAT  GTTAAGGT      TTTATGA    
    ||||||||||||| ||||||||||||             |||||||||||||||||| || |||||     ||||||||     |||  ||||||||      |||||||    A
    TTGGGCAAACCTA CTCGAATAAAAT             TCGAATACGTTTATTTAT TG AAATA     TAAGTATT     GTG  TAATTTTA      AAGTATT    
CTAA             A            -------------                  C  A     -TAAT        CAAAA   AT        AAATAG       CAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050067

TTAGGGCCCGTTTGGATGGAGCTTATTTTGAACTTTGCAAAACAGCTTATGCAAATAAATAAGCGTTTATTTATTATTTATAAACATGTTAAGGTAGTTTATGAAAAAACAACTTATGAAGATAAAATTTTAATTAGTGAAAACTTATGAATTAATATAAAAGTCTATTTATTTGCATAAGCTTAAAATAAGCTCAATCCAAACGGGTTAATC

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