SE2020069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5271
  • Medicago truncatula
  • SE2020069
  • Mutator
  • M31
  • MtChr4:12014057-12014464
  • CAAGTAATT
  • GGCTTAAATATGGAAATGGTCCCTGCAAATATCTTGCATTTTGGTTTTAGTCCCTATAAAAATATTTTTTTGGTTTTAGTCCTTGCAAAAATAGAATATTTGGTTTTGATCCTTAGTATTTTGTTTTAATCCTTGTAAAATCATTTCATATTGAAATTGGTCCCTATAATATTCATTTTAGTCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGTAATTA                                  T                                    -           T      A      T           A     A        T    A            CAT         AAA       CTA      ----------TC           CGTT
          GGCTTAAATATGGAAATGGTCCCTGCAAATATCT GCATTTTGGTTTTAGTCCCTATAAAAATATTTTTTT GGTTTTAGTCC TGCAAA ATAGAA ATTTGGTTTTG TCCTT GTATTTTG TTTA TCCTTGTAAAAT   TTCATATTG   TTGGTCC   TAATAT            ATTTTAGTCCT    
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||| ||||| |||||||| |||| ||||||||||||   |||||||||   |||||||   ||||||            |||||||||||     
          CCGAATTTATACTTTTATCAGGGACGTTTATAGA TGTAAAATCAAAATCAGGGATATTTTTATAAAAAAA CCAAAATCAGG ACGTTT TATTTT TAAACCAAAAC AGGAA CATAAAAC AAAT AGGAACATTTTA   AAGTATAAC   AACCAGG   ATTATA            TAAAATCAGGG    
 ATTAATGAA                                  C                                    A           T      A      T           C     A        T    C            ACT         CTA       AAC      CATCTTATAAAC           AGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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