SE2010070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5272
  • Medicago truncatula
  • SE2010070
  • Tc1/Mariner
  • St6
  • MtChr2:5419635-5419931
  • N.A.
  • ACTCCCTCCGTCCCATAATAAGTGAGCCATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
T   C    C    C  AA   G   G  A    CAAAAA      GTCCCAAGAAAACTGTCTCATTTCACTTTTCAATACAATATTAATAACTTTTTTCCAATTATAAATCTAACTAATACTAATTTCATCATTCCCAATTCAATAT
 ACT CCTC GTCC AT  TAA TGA CC TTTG      AATATT                                                                                                       
 ||| |||| |||| ||  ||| ||| || ||||      ||||||                                                                                                        
 TGG GGAG CAGG TA  ATT ACT GG AAAC      AGTGTG                                                                                                       
    A    A    A  GA   G   A  A    AAGTAA      CATAATTCTTTTTCACATATTCACTTTCTCTCTCTCTTATTATCAAAACTCACATAACAGTTCATAACCACATAAAGAGGGACAGTATTTACGCTTCGTCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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