Plant MITE

SE2050072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5274
Medicago truncatula
SE2050072
PIF/harbinger
To8
MtChr8:32629140-32629442
TTA
G

Secondary structure and sequence

TSD TIR

5'

3'

            TTA    C        TT ----     TT   ACT    TTTACCTACTCGCTTAAGTTTTGTGAGACTGTTTGAGAGAACTTATGAAAACAGTTAATGACAATTTTCATAAGCTTTTTTCAATTTATTTTCATAATTTCTCCAATATAG
               GAGC TATTTGGA  G    ACTTA  TGG   TGGG                                                                                                               
               |||| ||||||||  |    |||||  |||   ||||                                                                                                                
               TATT TGTTGAAT  A    TCGAA  TAT   GTGT                                                                                                               
ATTCCCGAACAAACC    -        -- AATA     --   --C    TCTTGAATAGTACTATTCGCAAATACATATTCGAATGTTTTCGATAAAAATATCCTATTCTATTTTATTACAATTTAACAAAAACATATACGATATTCAACAAATATATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050072

TTAGAGCCTATTTGGATTGACTTATTTGGACTTGGGTTTACCTACTCGCTTAAGTTTTGTGAGACTGTTTGAGAGAACTTATGAAAACAGTTAATGACAATTTTCATAAGCTTTTTTCAATTTATTTTCATAATTTCTCCAATATAGCTTATATAAACAACTTATAGCATATACAAAAACAATTTAACATTATTTTATCTTATCCTATAAAAATAGCTTTTGTAAGCTTATACATAAACGCTTATCATGATAAGTTCTTGTGCTATAAGCTATAAATAAGTTGTTTATCCAAACAAGCCCTTA

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