SE2030074

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5276
  • Medicago truncatula
  • SE2030074
  • hAT
  • Hat7
  • MtChr3:31061574-31061998
  • TAAATATT
  • AAATATTTGGCAATTTCTATGGTACACTCGAAAAATTTGAGTGTACCGCTACACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
T          -CAA             C  GAA     TGA     C  C       -ATATT   T       T       G  -     TTTTTAGGAAAAAATATTTTCTATCATTTACAGTTATAATAACAATATTTTATTTCTCAAAAATGTTGGCGAAGCAAAATTCAACTCTTTTTTTAATTTTTTTATTACTTATAATAGTGAATA
 AAATATTTGG    TTTCTATGGTACA TC   AAATT   GTGTA CG TACACCT      TAA TTAATAG TTAATGA TT ATATT                                                                                                                           
 ||||||||||    ||||||||||||| ||   |||||   ||||| || |||||||      ||| ||||||| ||||||| || |||||                                                                                                                           T
 TTTATAAATC    AAAGATGCCATGT AG   TTTAA   CACAT GC ATGTGGA      ATT AATTATT GATTGCT AG AAAAA                                                                                                                           
           CCTC             -  GAA     TTC     A  C       CAAAGT   T       C       -  T     TACATTTTTTCTCGATAAACAGCTGAAAATATAAAATCTTTTATAATAAAGTATTCTTTTTTATAGTAAAGTAAAAATATTCTTAGTATGATTAATAAAATGTAAAATAACTTTTTTATTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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