Plant MITE

SE2020076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5278
Medicago truncatula
SE2020076
Mutator
M18
MtChr2:10621891-10622097
CTAATTAAA
CTAATTAAATGAGGAATGCTAGCAACACTCACTTTTCAACACTCTCTTTCTCACTCACTCTTTCATTGGATGAAATCAATGTATGTC

Secondary structure and sequence

TSD TIR

5'

3'

       AAT     A              A     C            CTC           C     ATG      A   AT   CCAC       --T    A
CTAATTA   GAGGA TGCTAGCAACACTC CTTTT AACACTCTCTTT   ACTCACTCTTT ATTGG   AAATCA TGT  GTC    CACTTTG   ATGG 
|||||||   ||||| |||||||||||||| ||||| ||||||||||||   ||||||||||| |||||   |||||| |||  |||    |||||||   |||| T
GATTAAT   CTCTT ACGATCGTTGTGAG GAAAA TTGTGAGAGAGA   TGAGTGAGAGA TAACC   TTTAGT ACA  CAG    GTGAAGC   TATC 
       --C     C              A     C            TTA           A     AAA      A   CC   --AT       CTT    T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020076

CTAATTAAATGAGGAATGCTAGCAACACTCACTTTTCAACACTCTCTTTCTCACTCACTCTTTCATTGGATGAAATCAATGTATGTCCCACCACTTTGTATGGATTCTATTTCCGAAGTGTAGACCCACAATGATTTAAACCAATAAGAGAGTGAGTATTAGAGAGAGTGTTCAAAAGAGAGTGTTGCTAGCACTTCTCCTAATTAG

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