SE2020077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5279
  • Medicago truncatula
  • SE2020077
  • Mutator
  • M33
  • MtChr2:12102820-12103013
  • TATTTTTAT
  • ATGGTTTTGTTAAGTTATGCATTTATGGCACATGTTAAGGTTTCTACAAAGAGTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTT    --TTT      G  A   A    T                 CTA      -GT    ATTTAT    -----  ACATTAAATTTTAATCCTAT
       ATGG     TGTTAA TT TGC TTTA GGCACATGTTAAGGTTT   CAAAGA   AAGT      TTAG     AA                    
       ||||     |||||| || ||| |||| |||||||||||||||||   ||||||   ||||      ||||     ||                    G
       TATC     ACAATT AA ACG GAAT CCGTGTACAATTCCAAG   GTTTCT   TTTA      ATAC     AT                    
ATATTTT    TCTTT      G  C   G    C                 ---      ATC    ------    GTAAC  TTAACACAGTTAAATAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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